海底のDNAから読み解く絶滅危惧種スナメリの100年史 ―海棲哺乳類の個体数の推移を堆積物DNAから推定―

2026-06-15 愛媛大学

愛媛大学、松山大学、京都大学、麻布大学、国立環境研究所などの研究グループは、瀬戸内海・別府湾の海底堆積物に残された環境DNA(堆積物DNA)を用いて、絶滅危惧種スナメリの過去約100年間にわたる個体数変動を復元することに成功した。研究では、スナメリに特異的なDNA検出系を開発し、海底堆積物中のDNA濃度を解析した。その結果、スナメリ個体数は1940~1950年代に増加した後、1960年代初頭に急減し、その後は低迷したものの2000年代以降に回復傾向を示すことが明らかとなった。この変動は過去の現地調査による生息数データとも概ね一致していた。さらに、PCB(ポリ塩化ビフェニル)やカドミウムなどの環境汚染物質濃度との関係を調べたところ、PCB濃度が高い時期ほどスナメリDNA濃度が低下する負の相関が確認された。1960年代は日本でPCB生産量が急増した時期と重なり、当時の化学物質汚染がスナメリ個体群の減少に影響した可能性が示唆された。本研究は、海底に蓄積されたDNAから海棲哺乳類の長期的な個体数変動を推定した先駆的成果であり、絶滅危惧種の保全や環境変化の長期評価に活用できる新たなモニタリング手法として期待される。

海底のDNAから読み解く絶滅危惧種スナメリの100年史 ―海棲哺乳類の個体数の推移を堆積物DNAから推定―
スナメリ(海棲哺乳類)のイメージ図 (イラスト: 中根 快)。

<関連情報>

堆積物中のDNAを用いて過去100年間の海洋哺乳類の動態を評価する新たな試み:スナメリの事例 Novel attempt to assess marine mammal dynamics over the past 100 years using sedimentary DNA: An example in finless porpoise

Kai Nakane, Michinobu Kuwae, Hideyuki Doi, Mari Ochiai, Tomohiko Isobe, Tatsuya Kunisue, Narumi Tsugeki
Marine Pollution Bulletin  Available online 29 May 2026
DOI:https://doi.org/10.1016/j.marpolbul.2026.119895

Highlights

  • Long-term eDNA of marine mammal were recovered from sediment cores.
  • The sedimentary eDNA increased around the1950s, but rapidly declined in the 1960s.
  • sedDNA negatively correlated with polychlorinated biphenyls (PCBs) and Cd.
  • sedDNA positively correlated with temperature, prey abundance, and microplastics.
  • Decline of marine population around 1960 might be due to elevated chemical exposure.

Abstract

Marine mammal populations are suspected to have declined over the past century, with the adverse effects of chemical pollutants considered to be one of the major causes. However, field surveys of marine mammal populations are challenging because of technical issues, resulting in limited in situ data and unresolved questions regarding the historical impacts of chemical exposure. Here, we aimed to elucidate the long-term population dynamics of finless porpoise (Neophocaena asiaeorientalis), a sedentary species inhabiting coastal areas. To reconstruct population trends, we analyzed environmental DNA (eDNA) preserved in sediment cores collected from the Beppu Bay, Seto Inland Sea, Japan. eDNA concentrations in the sediment layers were determined using quantitative PCR. Temporal trends showed a distinct increase from the 1940s to the 1950s, followed by rapid decline in the early 1960s and then a recovery around 2000. Further analysis identified a significant negative correlation between the concentrations of sedimentary eDNA (sedDNA) and chemicals such as polychlorinated biphenyls (PCBs) and cadmium. Positive correlations were observed with temperature, prey abundance, and microplastics. Consistent with historical PCB production trends, the PCB concentrations in finless porpoise individuals collected from the Seto Inland Sea during the 1960–1970s were apparently higher than those during the 2000s. These findings suggest that the finless porpoise population in the region experienced a significant decline around 1960 owing to elevated chemical exposure. This study highlights the potential of sedDNA-based approaches to enhance our understanding of anthropogenic disturbances on marine animals over the long term.

1903自然環境保全
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