深層学習で小麦の旗葉角度を野外測定可能に(Deep Learning-based Method Enables Field Measurement of Flag Leaf Angle in Wheat)

2025-08-28 中国科学院(CAS)

中国科学院遺伝発生生物学研究所(IGDB)の姜妮教授らの研究チームは、小麦のフラグリーフ角度(FLANG)を圃場で効率的に計測するため、軽量ディープラーニングモデル「LeafPoseNet」を開発した。FLANGは光合成効率や収量性に直結する育種上重要な形質だが、従来は手作業に依存し、効率化が課題だった。LeafPoseNetは葉と茎の3点(葉中央、付け根、茎中央)を自動検出し角度を算出する方式を採用。従来モデルを上回る精度を示し、平均絶対誤差1.75°、決定係数R²=0.998を達成した。軽量設計によりスマートフォン上でも動作可能で、現場での高スループット計測を実現する。研究では221品種のパンコムギに適用し、GWAS解析によりFLANG関連の10個の量的形質遺伝子座(QTL)を特定、形質の遺伝構造理解に貢献した。本成果は小麦育種や遺伝解析を加速する有効なツールとなる。

深層学習で小麦の旗葉角度を野外測定可能に(Deep Learning-based Method Enables Field Measurement of Flag Leaf Angle in Wheat)
The flowchart of LeafPoseNet-based flag leaf angle phenotyping in wheat. (Image by IGDB)

<関連情報>

LeafPoseNet:小麦の旗葉角度を推定する低コスト・高精度手法 LeafPoseNet: A low-cost, high-accuracy method for estimating flag leaf angle in wheat

Qi Wang, Fujun Sun, Yi Qiao, Zongyang Li, Shusong Zheng, Hong-Qing Ling, Ni Jiang
The Crop Journal  Available online: 25 July 2025
DOI:https://doi.org/10.1016/j.cj.2025.07.002

Abstract

Flag leaf angle (FLANG) is one of the key traits in wheat breeding due to its impact on plant architecture, light interception, and yield potential. An image-based method of measuring FLANG in wheat would reduce the labor and error of manual measurement of this trait. We describe a method for acquiring in-field FLANG images and a lightweight deep learning model named LeafPoseNet that incorporates a spatial attention mechanism for FLANG estimation. In a test dataset with wheat varieties exhibiting diverse FLANG, LeafPoseNet achieved high accuracy in predicting the FLANG, with a mean absolute error (MAE) of 1.75°, a root mean square error (RMSE) of 2.17°, and a coefficient of determination (R2) of 0.998, significantly outperforming established models such as YOLO12x-pose, YOLO11x-pose, HigherHRNet, Lightweight-OpenPose, and LitePose. We performed phenotyping and genome-wide association study to identify the genomic regions associated with FLANG in a panel of 221 diverse bread wheat genotypes, and identified 10 quantitative trait loci. Among them, qFLANG2B.2 was found to harbor a potential causal gene, TraesCS2B01G313700, which may regulate FLANG formation by modulating brassinosteroid levels. This method provides a low-cost, high-accuracy solution for in-field phenotyping of wheat FLANG, facilitating both wheat FLANG genetic studies and ideal plant type breeding.

1200農業一般
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