除草剤残留物がダイズ土壌の窒素循環を阻害する一方、有益細菌が土壌健全性を回復(Herbicide Residues Disrupt Nitrogen Cycling in Soybean Soils, but Beneficial Bacterium Helps Restore Soil Health)

2026-07-29 中国科学院(CAS)

中国科学院応用生態研究所(IAE)の研究チームは、大豆栽培で広く使用される除草剤クロリムロンエチルが根圏土壌の窒素循環に及ぼす影響と、それを分解する細菌 Chenggangzhangella methanolivorans CHL1による土壌修復効果を明らかにした。圃場試験とマイクロコズム実験、メタゲノム解析の結果、除草剤残留は大豆の生育や根粒形成を阻害し、土壌pHを低下させるとともに、窒素固定・脱窒に関与する微生物や機能遺伝子を減少させた。一方で、硝化に関与する一部微生物は一時的に増加し、アンモニウム態窒素の減少と硝酸態窒素の増加など、窒素形態の変化が確認された。CHL1株を導入すると、土壌中のクロリムロンエチルは速やかに分解され、残留期間は半分以下に短縮されたほか、大豆の生育や根粒形成、窒素循環関連微生物群集と機能遺伝子、土壌pHや窒素状態が回復した。本研究は、分解細菌を利用した環境負荷の少ない農地土壌修復技術の有効性を示す成果である。

<関連情報>

クロリムロンエチルがダイズ系における根圏窒素循環機能遺伝子およびChenggangzhangella methanolivorans CHL1による微生物修復に及ぼす影響 Impacts of chlorimuron-ethyl on rhizosphere nitrogen cycling functional genes and microbial remediation by Chenggangzhangella methanolivorans CHL1 in soybean systems

Yumeng Dai, Xiang Li, Xinyu Guan, Zhiyang Han, Jiayu Li, Huiwen Zhang, Xu Li, Xiujuan Wang, Mingkai Xu
Geoderma  Available online: 28 June 2026
DOI:https://doi.org/10.1016/j.geoderma.2026.117921

除草剤残留物がダイズ土壌の窒素循環を阻害する一方、有益細菌が土壌健全性を回復(Herbicide Residues Disrupt Nitrogen Cycling in Soybean Soils, but Beneficial Bacterium Helps Restore Soil Health)

Highlights

  • CE inhibits soybean growth and affects rhizosphere soil nitrogen cycling.
  • CHL1 effectively reduces CE residues in soil.
  • CHL1 alleviates soybean growth inhibited by CE exposure.
  • CHL1 reverses CE-induced disturbances in nitrogen cycling microbiota and functions.
  • CHL1 restores nitrogen cycling assembly and co-occurrence networks affected by CE.

Abstract

The herbicide chlorimuron-ethyl (CE) is widely applied in soybean fields, but the long-term accumulation of its residues in soil poses risks to soil health and nitrogen cycling. Although many CE-degrading microbial strains are known, its impact on rhizosphere nitrogen cycling functional genes and microbial communities, as well as the effectiveness of remediation by CE-degraders remain unclear. Chenggangzhangella methanolivorans CHL1 is a novel CE-degrading bacterium with promising potential for herbicide bioremediation. Here, we tested CE at recommended (low-dose) and fivefold doses (high-dose) in field and pot experiments. Subsequently, we integrated soil physicochemical properties and metagenomic sequencing data to evaluate CE’s effects and CHL1-driven remediation of soybean rhizosphere nitrogen cycling functional genes and microbial communities. Results showed that CHL1 significantly decreased soil CE residues, shortened the half-life of CE by more than 50%, and alleviated CE-induced inhibition of soybean growth and nodulation. Notably, CE exposure reduced taxa associated with nitrogen fixation (Bradyrhizobium) and denitrification (Nocardioides) but enriched taxa associated with nitrification (Nitrososphaerota and Nitrospirota) in the soybean rhizosphere. Moreover, CE had consistent effects on the gene abundances of these nitrogen cycling-related modules, especially those related to nitrogen fixation. The inhibition rates of nifD, nifH, and nifK reached approximately 85.0%–93.3% across different stages. Furthermore, functional contribution analysis showed a transient increase in the contributions of Nitrososphaerota and Nitrospirota to nitrification-related functions. In contrast, the contribution of Bradyrhizobium to nitrogen fixation and denitrification-related functions was persistently reduced. These changes were accompanied by reductions in NH4±-N levels, increases in NO3-N levels, and decreases in soil pH. Importantly, by degrading CE, CHL1 alleviated the inhibition of the abundances of taxa and genes associated with nitrogen fixation and denitrification. For nitrogen fixation-associated genes, CHL1 reduced the inhibition rates to 2.7%–64.5% under CE exposure. CHL1 also reduced the CE induced enrichment of taxa and functional genes associated with nitrification, which was accompanied by partial recovery of soil nitrogen forms and pH. These findings enhance our understanding of how CHL1 mitigates CE-induced shifts in rhizosphere nitrogen cycling-related microbial and functional profiles. They also provide scientific support for the field application of degrading bacteria in soil remediation.

1202農芸化学
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